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This page contains a list of HOWTO documents for carrying out specific tasks on hyak.  For historical reasons some links start with Hyak_ and some start with Mox_. However,  most articles are valid for both ikt and mox.

Hyak_linux_command_line

Hyak_text_editor

Mox_scheduler

Hyak_files

Hyak_modules

Hyak R programming

Hyak RStudio

Hyak R ggplot2

Hyak building code

Hyak installing open source software

Hyak installing PETSc

Hyak python programming

Hyak_IPython_Jupyter

Mox_mpi4py

Hyak mpi4py

Hyak python dask

Hyak spark

Hyak hadoop

Hyak java programming

Hyak MATLAB programming

Hyak Julia programming

Hyak CPU Usage

Hyak multiple terminals

Hyak Windows

Hyak Windows file transfer

Hyak Mac file transfer

Hyak Linux file transfer

Hyak lolo file transfer

bbcp for high speed file transfer for Linux and Mac:

Hyak bbcp

Hyak gnu parallel

Hyak multiple queues

Hyak totalview debugger

Hyak intel mpi

Hyak fortran

Hyak gfortran4.8 gcc4.8

Hyak gfortran4.9 gcc4.9

Hyak gfortran6.3 gcc6.3

Hyak git1.8

Hyak git2.4

Hyak Visit

Hyak Paraview

Hyak CESM

Hyak SAM

Hyak WRF

Hyak netcdf

Hyak hdf5

Hyak cp2k

Hyak bowtie2

Hyak cutadapt

Hyak gurobi

Hyak emacs

Hyak S4

Hyak MEEP

Hyak relion

Hyak hyperion

Hyak cpp11

Hyak Mathematica

Hyak QGIS

Hyak GIS

Hyak MATLAB GPU

Hyak ABAQUS

Hyak Stacks

Hyak fsps

Hyak emcee

Hyak prospector

Hyak_ansys17

Hyak_python_netcdf

Hyak_disk_quota

Hyak_lolo_backup

Hyak_account_creation

Hyak_hpc_club

Hyak_high_memory

Hyak_tensorflow

Hyak_python_healpy

Hyak_bpp_evolution

Hyak_avx

Hyak_ssh

Hyak_lapack

Hyak_fftw

Hyak_intel_mkl

Hyak_cfitsio

Hyak_interactive_multiple_nodes

Hyak_fortran_quad_precision

Hyak_C_long_double

Hyak_python_decimal

Hyak_julia_bigfloat

Hyak_node_local_disk

Hyak_internet

Hyak_memory

Hyak_gromacs2016

Hyak_spack

Hyak_netcdf_gfortran

Hyak_glibc

Hyak_ssh_timeout

Mox_scheduler

Mox_pbs_to_slurm

Mox_pbs_nodefile

Mox_gui

Mox_mpi

Mox_hyak_file_transfer

Mox_ipython_jupyter

Mox_internet

Mox_fluent

Mox_multiple_queues_groups

Mox_cp2k

Mox_Gaussian

Mox_mathematica

Mox_poppler

Mox_checkpoint

Mox_hdf5

Mox_TMPDIR

Mox_gpu

Mox_gnu_parallel

Mox_ruby

Mox_genga

Mox_Rstan

Mox_VecLib

Mox_ranlib

Mox_quantum_computing_qutip

Mox_memory_cpu_usage

Mox_OpenSees

Mox_OpenSees_MP

Mox_OpenSees_Tutorial

Mox_genpool

Hyak_ikt_shutdown

Mox_bioawk

Mox_building_hdf5

Mox_building_netcdf

Mox_healpix

Mox_NGSolve

Mox_singularity

Mox_docker

Mox_job_array

Mox_per_core_scheduling

Mox_NAMD

Mox_NWChem


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