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Installing Stacks:

Replace xyz by your groupname and abc by your userid.

qsub -I -q build

mkdir /gscratch/xyz/abc/stacks_src

mkdir /gscratch/xyz/abc/stacks_install

source /opt/rh/devtoolset-4/enable

cd /gscratch/xyz/abc/stacks_src

wget http://catchenlab.life.illinois.edu/stacks/source/stacks-1.44.tar.gz

tar -xvf stacks-1.44.tar.gz

cd /gscratch/xyz/abc/stacks_src/stacks-1.44

./configure --prefix=/gscratch/xyz/abc/stacks_install

make

make install

 

 

 

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