Compute Node Software Requests

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Completed / Resolved / Fixed / Added

• totalview installed
• guile-devel
• Continuum Analytics distribution of python (it's free), Anaconda. https://store.continuum.io/cshop/anaconda/
• terminal multiplexer like tmux, https://tmux.github.io/ (screen is similar)
• netCDF Operators (NCO) = available in module epel and contrib/hydro
• Climate Data Operators (CDO) = available in module contrib/hydro

• Gnuplot 4.6
• Git
• Graphviz
• NetCDF

User app that can be built following the examples provided

• autoconf (2.59) and automake (1.9) are very old ; many newer ./configure based programs require 2.60 (1.10) or greater
• Parallel HDF5 (v. 1.6.10 or 1.8.4 compiled with the 1.6 compatibility flags from HDF5)
• VisIt parallel-visualization tool: https://wci.llnl.gov/codes/visit/
• HDF4
• scons, e.g. 2.0.1 from http://www.scons.org/download.php

Suggest users use the supplied Intel libraries instead

• scalapack, blacs
• enthought Python distribution takes care of {numpy, scipy, matplotlib}

Installed

• GNU Screen (http://www.gnu.org/software/screen/)
• X11 development headers and libriaries (Xaw,Xt,...)
• lsof (/usr/sbin/lsof)
• valgrind <- super helpful
• bc
• An updated version of svn. Old svn was version 1.4.2 (r22196). The current svn is 1.6.11.
• gcc 4.4.x (gcc44, gfortran44, g++44)
• bzip2
• qsub
• vim
• zlib
  *perl
• man
  *flex & bison
• More libraries (such as blas, lapack, fortran) in /usr/lib
• gnuplot
• python-devel
• strace
• split (part of coreutils)