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  1. Hyak hdf5

    Below are steps to compile a program which uses hdf5. Load the appropriate hdf5+compiler module Use module avail to see a list of hdf5+compiler options … lines similar to below: FFLAGS = -O3 -fp-model source -I/sw/hdf5-1.8.13_icc-15.0/include LDFLAGS = -L/usr/lib64 -L/sw/hdf5-1.8.13_icc-15.0/lib -lhdf5 Now you
    Hyak User DocumentationSep 20, 2018
  2. Hyak Compiling HDF5 Parallel

    Below you will find a sample session demonstrating how to use the Intel compilers to build a serial version of the HDF5 data format library with szlib … --mem=100G --pty /bin/bash $ cd /gscratch/mygroup/user $ bunzip2 -c hdf5-1.8.5-patch1.tar.bz2 | tar -xf - $ cd hdf5-1.8.5-patch1 Most packages should have
    Hyak User DocumentationMay 31, 2018
  3. Hyak Compiling HDF5 Serial

    Below you will find a sample session demonstrating how to use the Intel compilers to build a serial version of the HDF5 data format library with szlib … --mem=100G --pty /bin/bash $ cd /gscratch/mygroup/user $ bunzip2 -c hdf5-1.8.5-patch1.tar.bz2 | tar -xf - $ cd hdf5-1.8.5-patch1 Most packages should have
    Hyak User DocumentationMay 31, 2018
  4. Hyak Compile HDF5 Parallel

    Hyak Compiling HDF5 ParallelHyak Compiling HDF5 Parallel needs-review Migration of unmigrated content due to installation of a new plugin
    Hyak User DocumentationSep 01, 2016
  5. Hyak netcdf hdf5

    Hyak netcdfHyak netcdf needs-review Migration of unmigrated content due to installation of a new plugin
    Hyak User DocumentationSep 02, 2016
  6. Mox_hdf5

    Below abc is your userid and xyz is your  hyak group. On your desktop or laptop: (1) Go to the HDF5 web-site and register: https://www.hdfgroup.org/ https://www.hdfgroup.org/ (2) Click on downloads Download  hdf5-1.10.5-linux-centos7-x86_64-shared.tar.gz  (You may download a latter version than 1.10.5) (3) sftp
    Hyak User DocumentationDec 18, 2019
  7. Mox_building_hdf5

    See also Mox_building_netcdf Below are steps to build hdf5 libraries. HDF5 is a pre-req for netCDF. Here xyz is your hyak group and abc is your hyak userid. (The Fortran .mod files produced by different compilers are not compatible. Each time you use a different compiler, you should download the source code for HDF5
    Hyak User DocumentationDec 03, 2019
  8. Page list

    Hyak-Quota notes Hyak ANSYS Hyak Account Creation Hyak BLCR Hyak CESM Hyak CFX Hyak CPU Usage Hyak CSDE R Open MPI Hyak Citations Hyak Compile HDF5 Parallel Hyak Compiling HDF5 Parallel Hyak Compiling HDF5 Serial Hyak Email Support Hyak FDTD Solutions Hyak Fluent Hyak HOWTO Hyak_IPython_Jupyter Hyak
    Hyak User DocumentationSep 06, 2016
  9. Hyak Software

    versions of the HDF5 data format library are compiled, one serial with C++ support and one parallel without C++ support. Compiling HDF5 Serial Compiling HDF5 … msropen_<version> (old versions revolutionr_<version>). Open Source Data Libaries HDF5 HDF5 is a data storage library. Please see the HDF5
    Hyak User DocumentationAug 25, 2020
  10. Mox_building_netcdf

    HDF5 is a pre-req for netCDF. See Mox_building_hdf5 and build hdf5 before building netcdf4. See also Hyak netcdf (The Fortran .mod files produced by different compilers are not compatible. Each time you use a different compiler, you should download the source code for HDF5 and netcdf again and keep it in different
    Hyak User DocumentationDec 03, 2019