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  1. Hyak spark

    http://www.us.apache.org/dist/spark/spark-1.5.2/spark-1.5.2-bin-hadoop2.6.tgz tar -xvf spark-1.5.2-bin-hadoop2.6.tgz exit Start a multi-node hyak interactive session From hyak login node, get an interactive hyak session with 2 nodes and 28 cores per node for 12 hours srun -p hpc -A hpc --time=12:00:00 --nodes=2 --ntasks-per-node 28
    Hyak User DocumentationNov 04, 2019
  2. Hyak spark

    http://www.us.apache.org/dist/spark/spark-1.5.2/spark-1.5.2-bin-hadoop2.6.tgz tar -xvf spark-1.5.2-bin-hadoop2.6.tgz exit Start a multi-node hyak interactive session From hyak login node, get an interactive hyak session with 2 nodes for 12 hours: qsub -I -l nodes=2:ppn=16,walltime=12:00:00 Configure the Spark Cluster cat $PBS_NODEFILE Note the two nodes
    Hyak User DocumentationSep 02, 2016
  3. Hyak R programming

    takes care of details like finding a suitable node to run your R script etc. Interactive Session However, first let us use an interactive  session to get familiar with running R on hyak. Issue the command below at the hyak login node, to get a interactive hyak session. The build node can connect to outside mox.hyak
    Hyak User DocumentationNov 04, 2019
  4. Hyak_RStudio

    script. The hyak scheduler takes care of details like finding a suitable node to run your R script etc. Interactive Session However, first let us use an interactive qsub session to get familiar with running R on hyak. Issue the command below at the hyak login node, to get a interactive hyak session (the "-I" is an upper
    Hyak User DocumentationAug 31, 2016
  5. Hyak Job Scheduler

    of this page for information about the current Hyak scheduler (for both Ikt and Mox clusters). Opening an interactive session is not instantaneous. Resources … an interactive session to a node in the current terminal. The default walltime is 60 minutes. qsub -l walltime=2:00:00 -I Open an interactive session
    Hyak User DocumentationJul 26, 2018
  6. Past Sessions

    341 Facilitator: Bhumika Kothari, Business Analyst, UW-IT Information Management: Enterprise Document Management Bhumika will lead an interactive session … 2020 Unconference (Special Topics track) September 15, 2020: 3pm-4:30pm You build the agenda – bring a topic you'd like to discuss with your peers Session
  7. WIKI for Hyak users Guidelines

    session|Hyak Job Scheduler#Interactive Sessions] and looking around at the filesystems, etc. Then use the scheduler to run some simple shell scripts. Use … differ. Unless you are an experienced shell programmer, you are strongly encouraged to use bash since, for interactive use, bash and tcsh offer the same set
    Hyak User DocumentationAug 31, 2016
  8. Mox_mpi4py

    processes. During an interactive session, you cannot run across multiple nodes. module load gcc_4.8.5-impi_2017 mpirun -n 28 python my_mpi_program.py
    Hyak User DocumentationNov 04, 2019
  9. Hyak mox Overview

    the ckpt partition. sbatch -p ckpt -A <my short group>-ckpt test-job.sh Interactive Session Build Allocation - usage limited by core count and time srun -p
    Hyak User DocumentationAug 25, 2020
  10. Hyak mpi4py

    on an interactive node. One ikt node can run 16 processes. During an interactive session, you cannot run across multiple nodes. module load gcc_4.4.7-ompi_1.6.5 … module load gcc_4.4.7-ompi_1.6.5 pip install --user mpi4py You can verify that the install was fine by doing below steps in the interactive node: export
    Hyak User DocumentationNov 29, 2018