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  1. Hyak CESM

    . srun -p build --time=2:00:00 --mem=100G --pty /bin/bash 2. Load modules: module load icc_14.0.3-mpich2_mx_1.3.1_10 module load hdf5_1.8.13-icc_14.0.3 module load netcdf_fortran+c_4.4-icc_14.0.3 3. cd /gscratch/coenv/abc/CESM/CESM_builds/ 4. Create instance of the model ../cesm1_0_6_icc14x/scripts
    Hyak User DocumentationAug 25, 2020
  2. Hyak Software

    of the production software is available via "modules" that must be "loaded" before the corresponding programs can be used. For instance, module load r_3.2.0 makes R (3.2.0) available for the user. Loading a module executes certain setup tasks, typically configuring the environment and loading other modules, to make
    Hyak User DocumentationAug 25, 2020
  3. Hyak_CESM

    1. qsub -I -l walltime=00:59:00 2. Load modules: module load icc_14.0.3-ompi_1.8.3 module load hdf5_1.8.13-icc_14.0.3 module load netcdf_fortran … -scratchroot /gscratch/coenv/xyz/CESM/CESM_builds 5. Changes to env_mach_specific: Add: source /sw/Modules/default/init/csh module purge module load
    Hyak User DocumentationFeb 23, 2018
  4. Hyak_SAM

    SAM is System for Atmospheric Modeling. Below are steps to compile and run SAM with Intel MPI on Hyak. {{h4. h4. Compileh4. }} Step (1) load modules module load netcdf_fortran_4.4.1-icc_15.0 module load icc_15.0-impi_5.0.1 Step (2) export Intel compiler variables export I_MPI_CC=icc export I_MPI_CXX=icpc
    Hyak User DocumentationAug 31, 2016
  5. Hyak SAM

    ) load modules module load netcdf_fortran_4.4.1-icc_15.0 module load icc_15.0-impi_5.0.1 Step (2) export Intel compiler variables export I_MPI_CC=icc export … , Intel Compiler (Modified for HYAK at Univ. Washington) ## module load intel/13.1.1 openmpi netcdf/4.3.0 ifeq ($(PLATFORM),Linux) FF77 = mpif90 -c -fixed
    Hyak User DocumentationMay 31, 2018
  6. Mox_mpi

    Below xyz is your group name and abc is your userid. Compiling MPI program: See also Hyak Intel MPI Load one of below modules. Intel: Intel Mox: module load icc_18-impi_2018 Intel Ikt: module load icc_18-impi_2018 gcc: gcc Mox: module load gcc_4.8.5-impi_2017  gcc Ikt: module load gcc_4.4.7-impi_5.1.2
    Hyak User DocumentationNov 04, 2019
  7. Hyak MATLAB programming

    -node=28  --time=2:00:00 --mem=100G --pty /bin/bash Below command shows you the available matlab versions on hyak: module avail matlab Use below command to load matlab and start the GUI export TZ="America/Los_Angeles" module load matlab_2018a matlab After the above step, you can continue with your matlab commands
    Hyak User DocumentationAug 25, 2020
  8. Hyak R programming

    issue the command: module load r_3.6.0 Now the command R works.   After working for sometime, you may want to know what modules are still loaded in your … for the commands to get a build node. On the build node, issue below command to load the R module module load r_3.6.0 You may have to do extra steps for some
    Hyak User DocumentationNov 04, 2019
  9. Hyak Fluent

    ` module load icc_17-impi_2017 module load fluent_17 FLUENTNODES=`scontrol show hostnames | paste -d, -s` export INTELMPI_ROOT=${HYAK_FLUENT_MPI_ROOT … 's:$:-opa:' | paste -d, -s` module load fluent_18 module load icc_17-impi_2017 export INTELMPI_ROOT=${HYAK_FLUENT_MPI_ROOT} fluent 3ddp -t ${SLURM_NTASKS} -cnf
    Hyak User DocumentationAug 14, 2019
  10. Hyak_MATLAB_programming

    to load matlab module load matlab_2015b After the above step, you can continue with your matlab commands at the command line. For PBS queue use of matlab … the file name of the matab script is myfunction.m. module load matlab_2015b matlab -nosplash -nodisplay -r myfunction Matlab toolboxes on hyak: Obtain
    Hyak User DocumentationAug 31, 2016