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  1. Hyak CESM

    . srun -p build --time=2:00:00 --mem=100G --pty /bin/bash 2. Load modules: module load icc_14.0.3-mpich2_mx_1.3.1_10 module load hdf5_1.8.13-icc_14.0.3 module load netcdf_fortran+c_4.4-icc_14.0.3 3. cd /gscratch/coenv/abc/CESM/CESM_builds/ 4. Create instance of the model ../cesm1_0_6_icc14x/scripts
    Hyak User Documentation • Aug 25, 2020

  2. Hyak Software

    of the production software is available via "modules" that must be "loaded" before the corresponding programs can be used. For instance, module load r_3.2.0 makes R (3.2.0) available for the user. Loading a module executes certain setup tasks, typically configuring the environment and loading other modules, to make
    Hyak User Documentation • Aug 25, 2020

  3. Hyak_CESM

    1. qsub -I -l walltime=00:59:00 2. Load modules: module load icc_14.0.3-ompi_1.8.3 module load hdf5_1.8.13-icc_14.0.3 module load netcdf_fortran … -scratchroot /gscratch/coenv/xyz/CESM/CESM_builds 5. Changes to env_mach_specific: Add: source /sw/Modules/default/init/csh module purge module load
    Hyak User Documentation • Feb 23, 2018

  4. Hyak_SAM

    SAM is System for Atmospheric Modeling. Below are steps to compile and run SAM with Intel MPI on Hyak. {{h4. h4. Compileh4. }} Step (1) load modules module load netcdf_fortran_4.4.1-icc_15.0 module load icc_15.0-impi_5.0.1 Step (2) export Intel compiler variables export I_MPI_CC=icc export I_MPI_CXX=icpc
    Hyak User Documentation • Aug 31, 2016

  5. Hyak SAM

    ) load modules module load netcdf_fortran_4.4.1-icc_15.0 module load icc_15.0-impi_5.0.1 Step (2) export Intel compiler variables export I_MPI_CC=icc export … , Intel Compiler (Modified for HYAK at Univ. Washington) ## module load intel/13.1.1 openmpi netcdf/4.3.0 ifeq ($(PLATFORM),Linux) FF77 = mpif90 -c -fixed
    Hyak User Documentation • May 31, 2018

  6. Mox_mpi

    Below xyz is your group name and abc is your userid. Compiling MPI program: See also Hyak Intel MPI Load one of below modules. Intel: Intel Mox: module load icc_18-impi_2018 Intel Ikt: module load icc_18-impi_2018 gcc: gcc Mox: module load gcc_4.8.5-impi_2017  gcc Ikt: module load gcc_4.4.7-impi_5.1.2
    Hyak User Documentation • Nov 04, 2019

  7. Hyak MATLAB programming

    -node=28  --time=2:00:00 --mem=100G --pty /bin/bash Below command shows you the available matlab versions on hyak: module avail matlab Use below command to load matlab and start the GUI export TZ="America/Los_Angeles" module load matlab_2018a matlab After the above step, you can continue with your matlab commands
    Hyak User Documentation • Aug 25, 2020

  8. Hyak R programming

    issue the command: module load r_3.6.0 Now the command R works.   After working for sometime, you may want to know what modules are still loaded in your … for the commands to get a build node. On the build node, issue below command to load the R module module load r_3.6.0 You may have to do extra steps for some
    Hyak User Documentation • Nov 04, 2019

  9. Hyak Fluent

    ` module load icc_17-impi_2017 module load fluent_17 FLUENTNODES=`scontrol show hostnames | paste -d, -s` export INTELMPI_ROOT=${HYAK_FLUENT_MPI_ROOT … 's:$:-opa:' | paste -d, -s` module load fluent_18 module load icc_17-impi_2017 export INTELMPI_ROOT=${HYAK_FLUENT_MPI_ROOT} fluent 3ddp -t ${SLURM_NTASKS} -cnf
    Hyak User Documentation • Aug 14, 2019

  10. Hyak_MATLAB_programming

    to load matlab module load matlab_2015b After the above step, you can continue with your matlab commands at the command line. For PBS queue use of matlab … the file name of the matab script is myfunction.m. module load matlab_2015b matlab -nosplash -nodisplay -r myfunction Matlab toolboxes on hyak: Obtain
    Hyak User Documentation • Aug 31, 2016